Skip to contents

Plots the percentage of variation explained by each latent component in an sO2PLS (from the OmicsPLS package).

Usage

so2pls_screeplot(so2pls_res, datasets = NULL)

Arguments

so2pls_res

The output from the o2m function.

datasets

Optional, a character vector with the names of the datasets for which selected features should be extracted. Default is NULL, i.e. both datasets are considered.

Value

A patchwork of ggplots.

Details

Note that the plots are set up so that it is possible to add a custom colour palette to get different colours for each dataset (see example).

Examples

if (FALSE) { # \dontrun{
## by default, same colour used for both datasets (cannot find a way to fix that cleanly)
so2pls_screeplot(so2pls_final_res)

## Add a colour palette to get different colour for each dataset
so2pls_screeplot(so2pls_final_res) &
 scale_fill_brewer(palette = "Set1", drop = F)
} # }