Plot of variance explained — plot_variance

Displays the percentage of variance explained by each latent dimension in the output of a dimension reduction method for each dataset analysed.

Usage

plot_variance_explained(
  method_output,
  datasets = NULL,
  latent_dimensions = NULL,
  ncol = NULL,
  free_y_axis = FALSE,
  cumulative = FALSE
)

method_output: Integration method output generated via the get_output() function.
datasets: Character vector giving the datasets to display. Default value is NULL, i.e. all datasets will be shown.
latent_dimensions: Character vector giving the latent dimensions to display. Default value is NULL, i.e. all latent dimensions will be shown.
ncol: Integer, number of columns in the faceted plot. Default value is NULL.
free_y_axis: Logical, whether the y-axis (representing the percentage of variance) should have the same range for all datasets. Default value is FALSE.
cumulative: Logical, whether the cumulative percentage of variance explained should be plotted. Default is FALSE.

A ggplot.