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Runs DIABLO algorithm

Source: R/diablo.R
diablo_run.Rd

Runs the DIABLO algorithm (block.splsda) from the mixOmics package.

Usage

diablo_run(mixomics_data, design_matrix, ...)

Arguments

mixomics_data

A mixOmics input object created with get_input_mixomics_supervised.

design_matrix

Either numeric matrix created through diablo_generate_design_matrix, or character (accepted values are 'null', 'weighted_full', 'full'). See Details.

...

Arguments to be passed to the block.splsda function.

Value

An object of class block.splsda (if keepX argument was provided) or block.splsda (if it was not), see mixOmics::block.splsda() and mixOmics::block.plsda().

Details

The design_matrix argument can either be a custom design matrix (for example as constructed via the diablo_generate_design_matrix function); or a character indicating the type of design matrix to generate. Possible values include:

  • 'null': Off-diagonal elements of the design matrix are set to 0;

  • 'weighted_full': Off-diagonal elements of the design matrix are set to 0.1;

  • 'full': Off-diagonal elements of the design matrix are set to 1.