References
Bouhaddani, Said el, Hae-Won Uh, Geurt Jongbloed, Caroline Hayward,
Lucija Klarić, Szymon M. Kiełbasa, and Jeanine Houwing-Duistermaat.
2018. “Integrating Omics Datasets with the OmicsPLS
Package.” BMC Bioinformatics 19 (1): 371. https://doi.org/10.1186/s12859-018-2371-3.
Gu, Zhujie, Said el Bouhaddani, Jiayi Pei, Jeanine Houwing-Duistermaat,
and Hae-Won Uh. 2021. “Statistical Integration of Two Omics
Datasets Using GO2PLS.” BMC Bioinformatics
22 (1): 131. https://doi.org/10.1186/s12859-021-03958-3.
Hernandez-Ferrer, Carles, Carlos Ruiz-Arenas, Alba Beltran-Gomila, and
Juan R. González. 2017. “MultiDataSet: An r Package for
Encapsulating Multiple Data Sets with Application to Omic Data
Integration.” BMC Bioinformatics 18 (1): 36. https://doi.org/10.1186/s12859-016-1455-1.
Lê Cao, Kim-Anh, Simon Boitard, and Philippe Besse. 2011. “Sparse
PLS Discriminant Analysis: Biologically Relevant Feature Selection and
Graphical Displays for Multiclass Problems.” BMC
Bioinformatics 12 (1): 253. https://doi.org/10.1186/1471-2105-12-253.
Li, Jiyuan, Robert Mukiibi, Janelle Jiminez, Zhiquan Wang, Everestus C.
Akanno, Edouard Timsit, and Graham S. Plastow. 2022. “Applying
Multi-Omics Data to Study the Genetic Background of Bovine Respiratory
Disease Infection in Feedlot Crossbred Cattle.” Frontiers in
Genetics 13. https://www.frontiersin.org/articles/10.3389/fgene.2022.1046192.
Liquet, Benoit, Kim-Anh Lê Cao, Hakim Hocini, and Rodolphe Thiébaut.
2012. “A Novel Approach for Biomarker Selection and the
Integration of Repeated Measures Experiments from Two Assays.”
BMC Bioinformatics 13 (1): 325. https://doi.org/10.1186/1471-2105-13-325.
Luo, Weijun, Michael S. Friedman, Kerby Shedden, Kurt D. Hankenson, and
Peter J. Woolf. 2009. “GAGE: Generally Applicable
Gene Set Enrichment for Pathway Analysis.” BMC
Bioinformatics 10 (1): 161. https://doi.org/10.1186/1471-2105-10-161.
Timmons, James A., Krzysztof J. Szkop, and Iain J. Gallagher. 2015.
“Multiple Sources of Bias Confound Functional Enrichment Analysis
of Global -Omics Data.” Genome Biology 16 (1): 186. https://doi.org/10.1186/s13059-015-0761-7.
Zhao, Kangmei, and Seung Yon Rhee. 2023. “Interpreting Omics Data
with Pathway Enrichment Analysis.” Trends in Genetics 39
(4): 308–19. https://doi.org/10.1016/j.tig.2023.01.003.